aaron be499fc986 making the reference optional (the GATK will set it on the first run if it's not included), and setting the seq index if they do supply it. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4635 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-07 18:15:31 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	making the reference optional (the GATK will set it on the first run if it's not included), and setting the seq index if they do supply it.	2010-11-07 18:15:31 +00:00
test	Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array.	2010-11-03 19:23:03 +00:00