depristo be333da9c0 charSeq2byteSeq -- convert a char[] to a byte[] for convenience ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1917 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-27 21:52:23 +00:00
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alignment	Read uints directly into longs.	2009-10-15 16:15:11 +00:00
gatk	Almost ready to stop doing eagar decoding; waiting on Eric	2009-10-27 15:28:05 +00:00
playground	More robust error handling with parallelization + usePreviousBase. Added forceReadBasesToMatchRef to use in conjunction with nPreviousReadBases as a less stringent approximation of usePreviousBases (requiring previous pileups only had mismatches, and that read mapping quality be high was throwing everything away)	2009-10-27 17:20:44 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	charSeq2byteSeq -- convert a char[] to a byte[] for convenience	2009-10-27 21:52:23 +00:00