Mark DePristo be0f8beebb Fixed GSA-434: GATK should generate error when gzipped FASTA is passed in. ... -- The GATK sort of handles this now, but only if you have the exactly correct sequence dictionary and FAI files associated with the reference. If you do, the file can be .gz. If not, the GATK will fail on creating the FAI and DICT files. Added an error message that handles this case and clearly says what to do.		2012-08-17 11:49:02 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Fixed GSA-434: GATK should generate error when gzipped FASTA is passed in.	2012-08-17 11:49:02 -04:00
test	Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-08-16 13:05:36 -04:00