gatk3的最后一个经典版本3.8

depristo bdd0a6f9fa change to make build work ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1511 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-03 13:43:10 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	change to make build work	2009-09-03 13:43:10 +00:00
packages	Added VariantFiltrationWalker to GATK early release.	2009-09-02 02:17:50 +00:00
perl	A useful perl module for quick argument parsing.	2009-08-31 15:44:57 +00:00
python	High performance LocusIterator implementation. Now with greatly reduced memory impact and 2x (and more potentially) speed ups of raw locus iteration. General performance improvements to SSG with empirical probs. You can enable high-performance locus iteration with the -LIBS arg. It's still testing but passes validing pileup.	2009-09-03 03:06:25 +00:00
scala/src	support for scala walkers	2009-08-28 00:15:01 +00:00
settings	Switched to Reflections (http://code.google.com/p/reflections/) project for	2009-07-21 18:32:22 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	change to make build work	2009-09-03 13:43:10 +00:00
build.xml	Nicer building of scala programs	2009-08-29 16:41:56 +00:00
ivy.xml	Switched to Reflections (http://code.google.com/p/reflections/) project for	2009-07-21 18:32:22 +00:00