gatk-3.8/public/R
Mark DePristo 6c2290fb6e Performance optimization for gsa.read.gatkreport.R
-- instead of using y = rbind(x, y), which is O(n^2) in a loop when processing lines into a data structure in R, preallocate a matrix and explicitly assign each row to x.  This results in a radical performance improvement when reading large tables into R.  It's possible with this optimization to read in a 70MB table for variantQCReport.R with 200K lines for 800 samples.
2012-03-22 21:24:36 -04:00
..
scripts/org/broadinstitute/sting queueJobReport now compresses PDF when running R 2.13+. 2012-01-10 17:32:30 -05:00
src/org/broadinstitute/sting/utils/R/gsalib Performance optimization for gsa.read.gatkreport.R 2012-03-22 21:24:36 -04:00
titvFPEst.R Moving some of the released R scripts into public from private 2011-06-30 14:55:25 -04:00