gatk3的最后一个经典版本3.8

aaron bd4cacb832 Added code to make a read group and sample name for BAM files that don't annotate them on reads. The defaults for both are now the filename, but this may be shortened in the future. ... The sample name for a read can be retrieved with the command: read.getAttribute(SAMTag.RG.toString()); git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@518 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-24 00:31:00 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated the hello world document to reflect system changes.	2009-04-22 23:25:15 +00:00
java	Added code to make a read group and sample name for BAM files that don't annotate them on reads. The defaults for both are now the filename, but this may be shortened in the future.	2009-04-24 00:31:00 +00:00
python	Support for indexBAM command	2009-04-22 19:39:07 +00:00
settings	Latest version of sam.	2009-04-15 21:02:25 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Better validation scripts	2009-04-16 23:18:00 +00:00
build.xml	Added the base test case, fixed the rest of the test cases to follow suit. Added more verbose output to ant for junit tests.	2009-04-14 17:11:38 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00