rpoplin 457c59e737 Use the sites-only HapMap files in the Methods development pipeline ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5013 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-18 20:50:09 +00:00
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qscript	Use the sites-only HapMap files in the Methods development pipeline	2011-01-18 20:50:09 +00:00
src/org/broadinstitute/sting	VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks.	2011-01-18 20:48:19 +00:00
test/org/broadinstitute/sting/queue	Updated to reflect QD changes in r4984	2011-01-13 20:10:21 +00:00