gatk-3.8/java
ebanks bd2a46ab4c I want to move over to hpprojects tonight, so I'm checking in various changes all in one go:
1. Initial code for annotating calls with the base mismatch rate within a reference window (still needs analysis).
2. Move error checking code from rodVCF to VCFRecord.
3. More improvements to SNP Genotype callset concordance.
4. Fixed some comments in Variation/Genotype



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2341 348d0f76-0448-11de-a6fe-93d51630548a
2009-12-13 02:52:18 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting I want to move over to hpprojects tonight, so I'm checking in various changes all in one go: 2009-12-13 02:52:18 +00:00
test/org/broadinstitute/sting I want to move over to hpprojects tonight, so I'm checking in various changes all in one go: 2009-12-13 02:52:18 +00:00