Mark DePristo 59df329776 Fast path for biallelic variants in IndependentAllelesDiploidExactAFCalc ... -- If the VariantContext is a bi-allelic variant already, don't split up the VC (it doesn't do anything) and then combine it back together. This saves us a lot of work on average -- Be more protective of calls to AFCalc with a VariantContext that might only have ref allele, throwing an exception		2013-02-06 10:34:09 -05:00
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gatk	Fast path for biallelic variants in IndependentAllelesDiploidExactAFCalc	2013-02-06 10:34:09 -05:00
utils	Added check that BaseRecalibrator is not being run on a reduced bam.	2013-02-06 10:14:27 -05:00
package-info.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00