gatk-3.8/public/java
Mark DePristo bcf80cc7b3 Cleanup in VariantEval. Example of molten VariantEval output
-- Moved a variety of useful formatting routines for ratios, percentages, etc, into VariantEvalator.java so everyone can share.  Code updated to use these routines where appropriate
-- Added variantWasSingleton() to VariantEvaluator, which can be used to determine if a site, even after subsetting to specific samples, was a singleton in the original full VCF
-- TableType, which used to be an interface, is now an abstract class, allowing us to implement some generally functionality and avoid duplication.
-- This included creating a getRowName() function that used to be hardcoded as "row" but how can be overridden.
-- #### This allows us implement molten tables, which are vastly easier to use than multi-row data sets.  See IndelHistogram class (in later commit) for example of molten VE output
2012-03-22 21:24:37 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Cleanup in VariantEval. Example of molten VariantEval output 2012-03-22 21:24:37 -04:00
test Added respectPhaseInInput flag to RBP and integration tests 2012-03-22 17:40:21 -04:00