Mauricio Carneiro feeab6075f Merging ReduceReads development with unstable repo ... It is time to bring the ReadClipper class to the main repo. Read Clipper has tested functionality for soft and hard clipping reads. I will prepare thorough documentation for it as it will be very useful for the assembler and the GATK in general.		2011-08-22 23:03:03 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Merging ReduceReads development with unstable repo	2011-08-22 23:03:03 -04:00