aaron bca894ebce Adding the intial changes for the new Genotyping interface. The bullet points are: ... - SSG is much simpler now - GeliText has been added as a GenotypeWriter - AlleleFrequencyWalker will be deleted when I untangle the AlleleMetric's dependance on it - GenotypeLikelihoods now implements GenotypeGenerator, but could still use cleanup There is still a lot more work to do, but this is a good initial check-in. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1335 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-29 19:43:59 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Adding the intial changes for the new Genotyping interface. The bullet points are:	2009-07-29 19:43:59 +00:00
test/org/broadinstitute/sting	Adding the intial changes for the new Genotyping interface. The bullet points are:	2009-07-29 19:43:59 +00:00