gatk-3.8/java/src/org/broadinstitute/sting
depristo bca3d1b943 useful convenience function to get a genotype associated with a particular sample
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2510 348d0f76-0448-11de-a6fe-93d51630548a
2010-01-06 14:53:56 +00:00
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alignment Misc bug fixes. 2010-01-05 14:48:19 +00:00
analyzecovariates AnalyzeCovariates would crash with 'too many open files' exception when spawning Rscript jobs for every read group at once. It now waits for some to finish before spawning the rest. 2010-01-06 14:19:02 +00:00
gatk Temporary command-line support to enable rod walkers, if you know what you are doing this is safe. 2010-01-06 12:15:36 +00:00
oneoffprojects Misc bug fixes. 2010-01-05 14:48:19 +00:00
playground Simple extension to VariantEval: --includeFilteredRecords will now keep filtered VCF records so you can see what the entire call set looks like. Looking forward to VariantEval v2 from Kiran. 2010-01-06 12:59:09 +00:00
utils useful convenience function to get a genotype associated with a particular sample 2010-01-06 14:53:56 +00:00