kshakir 83e207d9dd Added option to exclude intervals during chunk calling. ... Removed job priority as temp space isn't as tight at the moment and planning on changing the priority interface. Updated chunk calling with ebanks: - Using "the bundle" of resources. - Using dbsnp 132 and 1000G indel RODs for both RTC & IR. - Using the default maxIntervalSize in RTC. - Removed use of UG.exactCalculation argument. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5814 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-18 03:48:02 +00:00
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BatchMerge.q	James P says this change worked for him, so I'm committing it.	2011-05-12 16:55:18 +00:00
FullCallingPipeline.q	Disabling the queue/pipeline package by default so that scala code can build. If it's not going to be fixed the package should be removed. If it is going to be fixed this patch to build.xml should be reverted.	2011-05-04 12:17:33 +00:00
MultiFullCallingPipeline.scala	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
WholeGenomePipeline.scala	Added option to exclude intervals during chunk calling.	2011-05-18 03:48:02 +00:00
recalibrate.scala	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00