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gatk-3.8/public/java/src/org/broadinstitute/sting/alignment
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Geraldine Van der Auwera 6208742f7c Refactored GATKDocs categories some more ( GSATDG-62 ) 
-- Renamed ValidatePileup to CheckPileup since validation is reserved word
-- Renamed AlignmentValidation to CheckAlignment (same as above)
-- Refactored category definitions to use constants defined in HelpConstants
-- Fixed a couple of minor typos and an example error
-- Reorganized the GATKDocs index template to use supercategories
-- Refactored integration tests for renamed walkers (my earlier refactoring had screwed them up or not carried over)
 		2013-02-13 16:49:18 -05:00
..
bwa Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00
reference Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
Aligner.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
Alignment.java Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00
CheckAlignment.java Refactored GATKDocs categories some more ( GSATDG-62 ) 2013-02-13 16:49:18 -05:00
package-info.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00