Mark DePristo bbdf9ee91b BQSR cleanup: merge Advanced and Standard recalibration engine into just the RecalibrationEngine ... -- As we are no longer maintaining a public/protected system we need only have one RecalibrationEngine. -- Misc. code cleanup and docs along the way		2013-01-04 11:39:24 -05:00
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src/org/broadinstitute/sting	BQSR cleanup: merge Advanced and Standard recalibration engine into just the RecalibrationEngine	2013-01-04 11:39:24 -05:00
test/org/broadinstitute/sting	One md5sum slipped past in the HC integration test.	2013-01-02 15:09:28 -05:00