chartl 0e40321a52 Brütall hack: make the bam list creator job wait for the interval creator job, so that there is an implicit dependency of UG on the interval list, by way of the bam list ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4628 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-04 20:43:11 +00:00
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chartl	Brütall hack: make the bam list creator job wait for the interval creator job, so that there is an implicit dependency of UG on the interval list, by way of the bam list	2010-11-04 20:43:11 +00:00
depristo	- After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list.	2010-10-21 06:37:28 +00:00
examples	- After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list.	2010-10-21 06:37:28 +00:00
rpoplin	At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them.	2010-09-02 21:30:48 +00:00
fullCallingPipeline.q	There's no such thing as a sam index, so the GATK extension generator doesn't need to add an @Input for them.	2010-10-27 20:39:03 +00:00
recalibrate.scala	- After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list.	2010-10-21 06:37:28 +00:00