Ryan Poplin 211a6e78ea Further related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.		2012-12-12 14:53:02 -05:00
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gatk	Further related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-12 14:53:02 -05:00
utils	Do not let reduced reads get removed in the contamination down-sampling	2012-10-26 02:13:04 -04:00
package-info.java	build system overhaul	2012-05-17 15:16:29 -04:00