Ryan Poplin 211a6e78ea Further related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.		2012-12-12 14:53:02 -05:00
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src/org/broadinstitute/sting	Further related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-12 14:53:02 -05:00
test/org/broadinstitute/sting	Resolves GSA-681 / Compressed VCF.gz output is too big because of unnecessary call to flush().	2012-12-12 10:27:07 -05:00