ebanks bb92e31118 Optimizations: ... 1. push the ReadBackedPileup filtering up into the ReadFilters for read-based filters 2. stop querying the cigar for its length (just do it once) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2381 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-16 21:39:58 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Optimizations:	2009-12-16 21:39:58 +00:00
test/org/broadinstitute/sting	Joint Estimate is now the default calculation model.	2009-12-16 19:41:02 +00:00