hanna 0791beab8f Checking in downsampling iterator alongside LocusIteratorByState, and removing ... the reference implementation. Also implemented a heap size monitor that can be used to programmatically report the current heap size. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3367 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-17 21:00:44 +00:00
..
bed	…
collections	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
fasta	…
genotype	speed-up for VCF, adding code to the VCF reader to automagically make an index if one doesn't already exist, and a change to the VCF writer unit test	2010-05-05 20:19:42 +00:00
sam	Rev the reservoir downsampler to support partitioning through a functor.	2010-04-21 19:50:26 +00:00
threading	…
BaseUtilsUnitTest.java	…
GenomeLocParserUnitTest.java	…
GenomeLocSortedSetUnitTest.java	add a fix so that XL arguments won't cancel out -BTI arguments, fixed a bug for Ben where the ROD -> interval list conversion was throwing an exception, and some old code removal.	2010-04-15 16:31:43 +00:00
GenomeLocUnitTest.java	…
MathUtilsUnitTest.java	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
PathUtilsUnitTest.java	…
ReservoirDownsamplerUnitTest.java	Checking in downsampling iterator alongside LocusIteratorByState, and removing	2010-05-17 21:00:44 +00:00
UtilsUnitTest.java	…