gatk3的最后一个经典版本3.8

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Ami Levy-Moonshine bb76821942 New (private) read filter that can revert the MQ of reads affected by indel realignment. In the process of realignment we add +10 to the MQ of each realigned read, breaking the MQ 60 cap. That may contribute to problems observed by Bertrand (a step in the ROC curve plot of the VQSR results)		2015-03-26 01:07:08 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Remove indel-length normalization of QD for GGVCFs	2015-03-24 08:22:19 -04:00
public	Merge pull request #887 from broadinstitute/pd_vcf_cmdline_hdr	2015-03-25 00:48:55 -04:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

The Genome Analysis Toolkit