39 lines
1.1 KiB
Java
39 lines
1.1 KiB
Java
/*
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* The Broad Institute
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* SOFTWARE COPYRIGHT NOTICE AGREEMENT
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* This software and its documentation are copyright 2009 by the
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* Broad Institute/Massachusetts Institute of Technology. All rights are reserved.
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*
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* This software is supplied without any warranty or guaranteed support whatsoever. Neither
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* the Broad Institute nor MIT can be responsible for its use, misuse, or functionality.
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*/
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package edu.mit.broad.picard.sam;
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import edu.mit.broad.picard.metrics.MetricBase;
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/**
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* Metrics class for insert size statistics
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*
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* @author Doug Voet
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*/
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public class InsertSizeMetrics extends MetricBase {
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public double MEDIAN_INSERT_SIZE;
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public int MIN_INSERT_SIZE;
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public int MAX_INSERT_SIZE;
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public double MEAN_INSERT_SIZE;
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public double STANDARD_DEVIATION;
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public long READ_PAIRS;
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public int WIDTH_OF_10_PERCENT;
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public int WIDTH_OF_20_PERCENT;
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public int WIDTH_OF_30_PERCENT;
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public int WIDTH_OF_40_PERCENT;
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public int WIDTH_OF_50_PERCENT;
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public int WIDTH_OF_60_PERCENT;
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public int WIDTH_OF_70_PERCENT;
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public int WIDTH_OF_80_PERCENT;
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public int WIDTH_OF_90_PERCENT;
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public int WIDTH_OF_99_PERCENT;
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}
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