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depristo 59083a47d5 Initial Analysis toolkit 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-02-26 21:50:29 +00:00
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CollectAlignmentSummaryMetrics.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
CollectInsertSizeMetrics.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
ComparableSamRecordIterator.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
CreateSequenceDictionary.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
DuplicationMetrics.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
InsertSizeMetrics.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MarkDuplicates.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MarkDuplicates2.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MergeSamFiles.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MergingSamRecordIterator.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
ReservedTagConstants.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
SamFileHeaderMerger.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
SamLocusIterator.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00