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depristo 59083a47d5 Initial Analysis toolkit 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-02-26 21:50:29 +00:00
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BamToBfqWriter.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MapFileIterator.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MaqAligner.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MaqConstants.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
MaqMapMerger.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00
RunMaq.java Initial Analysis toolkit 2009-02-26 21:50:29 +00:00