gatk3的最后一个经典版本3.8

Mark DePristo bb42c90f2b Use LinkedHashSets in incoming and outgoing vertex functions in BaseGraph ... -- Using a LinkedHashSet changed the md5 for HCTestComplexVariants.		2013-04-02 17:58:20 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Use LinkedHashSets in incoming and outgoing vertex functions in BaseGraph	2013-04-02 17:58:20 -04:00
public	Merge pull request #140 from broadinstitute/dr_interval_intersection_bug_GSA-909	2013-04-02 11:59:01 -07:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00