Ryan Poplin bb29bd7df7 Use base List and Map types in the HaplotypeCaller when possible.		2013-01-30 17:09:27 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Use base List and Map types in the HaplotypeCaller when possible.	2013-01-30 17:09:27 -05:00
test	Move BaseUtils back to the GATK by request, along with associated utility methods	2013-01-30 13:09:44 -05:00