Eric Banks baf3e33730 Allele refactoring checkpoint 2: all code finally compiles, AD and STR annotations are fixed, and most of the UG integration tests pass.		2012-07-26 23:27:11 -04:00
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src/org/broadinstitute/sting	Merge branch 'master' into allelePadding	2012-07-26 01:53:14 -04:00
test/org/broadinstitute/sting/gatk/walkers	Allele refactoring checkpoint 2: all code finally compiles, AD and STR annotations are fixed, and most of the UG integration tests pass.	2012-07-26 23:27:11 -04:00