gatk3的最后一个经典版本3.8

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Eric Banks bad7865078 When converting a haplotype to a set of variants we now check for cases that are overly complex. In these cases, where the alignment contains multiple indels, we output a single complex variant instead of the multiple partial indels. We also re-enable dangling tail recovery by default.		2014-07-01 14:18:59 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	When converting a haplotype to a set of variants we now check for cases that are overly complex.	2014-07-01 14:18:59 -04:00
public	When converting a haplotype to a set of variants we now check for cases that are overly complex.	2014-07-01 14:18:59 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed minor pom.xml line that was out of place after sortpom.	2014-06-26 01:01:19 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/