ebanks 73a14a985b Moving VariantsToVCF to core. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3078 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-26 18:55:12 +00:00
..
duplicates	forgot to update md5s	2009-12-29 20:31:29 +00:00
poolseq	Added - new tests (Hapmap was re-added)	2009-12-14 21:57:20 +00:00
vcftools	Just like VariantFiltration but lets you match info fields out of the VCF instead of annotating them.	2010-01-29 15:38:03 +00:00
ClipReadsWalkersIntegrationTest.java	-Pushed base quals back down into SAMRecord; if -OQ is used, the SAMRecord quals get updated automatically	2010-03-17 16:00:10 +00:00
ConcordanceTruthTableTest.java	1. To make indel calls, we need to get rid of the SNP-centricity of our code. First step is to have the reference be a String, not a char in the Genotype. Note that this is just a temporary patch until the genotype code is ported over to use VariantContext.	2010-03-02 20:26:40 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	Hurrr -- this uses power as part of its output. Changes to the power calculation broke the md5s RIGHT AFTER I HAD FIXED THEM arghflrg.	2009-12-14 22:42:50 +00:00