David Roazen baae381acb Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable" ... This reverts commit 039a6bb01f345322ce2be50ae3634308bb24e77e, reversing changes made to b9c9973d1c638dfc9f8c19b5eb845e99844f9d29.		2011-07-19 18:38:53 -04:00
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Aligner.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
AnalyzeCovariates.xml	Removed TileCovariate as a dependency for AnalyzeCovariates.jar	2011-07-11 12:10:11 -04:00
CreatePackager.xsl	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
FindContaminatingReadGroups.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GATK-Picard.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GATKEngine.xml	Fixes to the packaging system to work with the new directory structure.	2011-06-30 18:27:17 -04:00
GATKResources.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeAnalysisTK.xml	Moving AnalyzeAnnotations into the archive because it has outlived its usefulness.	2011-07-02 10:39:53 -04:00
IndelGenotyper.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
LocalRealignmentAroundIndels.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PicardPrivate.xml	Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable"	2011-07-19 18:38:53 -04:00
QualityScoresRecalibration.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
Queue.xml	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
RMDIndexer.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
UnifiedGenotyper.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
VariantAnnotator.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
VariantEval.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
VariantFiltration.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
VariantRecalibration.xml	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00