gatk3的最后一个经典版本3.8

Mark DePristo ba9e95a8fe Revert "Reorganized NanoScheduler so that main thread does the reduces" ... Doesn't actually fix the problem, and adds an unnecessary delay in closing down NanoScheduler, so reverting. This reverts commit 66b820bf94ae755a8a0c71ea16f4cae56fd3e852.		2012-09-20 18:45:15 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Bad news folks: BQSR scatter-gather was totally busted; you absolutely cannot trust any BQSR table that was a product of SG (for any version of BQSR). I fixed BQSR-gathering, rewrote (and enabled) the unit test, and confirmed that outputs are now identical whether or not SG is used to create the table.	2012-09-20 14:14:34 -04:00
public	Revert "Reorganized NanoScheduler so that main thread does the reduces"	2012-09-20 18:45:15 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00