gatk3的最后一个经典版本3.8

aaron ba99e9f648 checking in some of the more static Data Source dependent code at this point. They don't do much on their own, but are need for the base data source code I'm writing. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@231 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-31 00:04:03 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Check in the omniplan file for easier sharing.	2009-03-30 21:31:54 +00:00
java	checking in some of the more static Data Source dependent code at this point. They don't do much on their own, but are need for the base data source code I'm writing.	2009-03-31 00:04:03 +00:00
python	Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.	2009-03-24 03:58:03 +00:00
settings	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Bug fix: build couldn't be forced to core. Now it can be.	2009-03-29 01:36:25 +00:00
ivy.xml	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00