hanna 60a86fb34a Better handling of fasta files with non-standard extensions.x ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1206 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-09 18:18:48 +00:00
..
ArtificialFastaUtils.java	made a fake fasta generator, so we can now generate a complete bam / fasta combo of made up data.	2009-07-01 21:35:34 +00:00
FastaSequenceIndex.java	allow contig names to have spaces in the fai. This is not yet supported by samtools fai generator (which truncates at the first space), but we might as well fix it on our side.	2009-06-16 22:23:12 +00:00
IndexedFastaSequenceFile.java	Better handling of fasta files with non-standard extensions.x	2009-07-09 18:18:48 +00:00
package.html	Package level documentation -- helps new users get acclimated to the codebase more quickly.	2009-06-17 16:27:48 +00:00