asivache ba2a3d8a58 Reverse qualities when read seq. is reverse complemented ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1417 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-12 20:17:35 +00:00
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gatk	added the ability to pass in a csv file of ROD triplets (one triplet per line) to the -B option	2009-08-11 22:10:20 +00:00
playground	Reverse qualities when read seq. is reverse complemented	2009-08-12 20:17:35 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Added : String reverse(String s) - reverses a string	2009-08-12 20:16:22 +00:00