gatk3的最后一个经典版本3.8

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Chris Whelan ba1d23e535 Created a new tool, SiblingIBD, which finds Identical-By-Descent regions in two siblings. -When parental genotypes are available, implements an HMM on genotype observations in the quartet. -Outputs IBD regions as well as per-site posterior probabilities of being in each IBD state. -Includes an experimental heuristic based mode for when parental genotypes are not available. -Made a method in MendelianViolation public static to reuse code. -Added the mockito library to private/gatk-tools-private/pom.xml		2014-06-13 09:41:37 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #646 from broadinstitute/ks_disable_distribution_with_private	2014-06-11 11:00:31 -04:00
public	Created a new tool, SiblingIBD, which finds Identical-By-Descent regions in two siblings.	2014-06-13 09:41:37 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/