Mark DePristo 3a8f001c27 Misc. fixes upon pull request review ... -- DeBruijnAssemblerUnitTest and AlignmentUtilsUnitTest were both in DEBUG = true mode (bad!) -- Remove the maxHaplotypesToConsider feature of HC as it's not useful		2013-03-20 22:54:37 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	HaplotypeCaller now uses SeqGraph instead of kmer graph to build haplotypes.	2013-03-20 22:54:36 -04:00
test	Misc. fixes upon pull request review	2013-03-20 22:54:37 -04:00