gatk3的最后一个经典版本3.8

Mark DePristo b9be8850e2 Bugfixes to NA12878DBArgumentCollection and JSON and the GATK argument value injection system ... -- Functions that depend on the value of variables that have GATK injection values must be initialized lazy, not at object creation time. Previous version broken dbToUse and useLocal arguments. Fixed		2012-11-28 19:02:07 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Add ActiveRegionReadState handling	2012-11-28 13:59:57 -05:00
public	Update GATK packaging settings to package arbitrary resources	2012-11-28 15:26:05 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Allow arbitrary resources to be packaged in the GATK jar, selecting among public/private/protected appropriately	2012-11-28 14:53:08 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00