gatk3的最后一个经典版本3.8

Mark DePristo b987df5d8d GATKPerformanceOverTime now includes a mode to comparing HC & UG performance ... -- Compares HC and UG performance on single deep genomes and 140 WEx bams over small intervals, as well as deep WGS reduced data and 1000G 4x data -- Added mode to GATKPerformanceOverTime to include lots of versions, so we can make beautiful graphs of the cost of tools over many versions as well -- Marginally better plots for multiple iterations in GATKPeformanceOverTime.R		2013-02-27 10:58:34 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merged bug fix from Stable into Unstable	2013-02-27 05:20:41 -05:00
public	Merged bug fix from Stable into Unstable	2013-02-27 05:20:41 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00