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Geraldine Van der Auwera d87345cd1d GATKDocs overhaul 
- Fixed displaying of default values
    - Removed code cruft
    - Reorganized tooldoc categories and improved names
    - Reorganized tools within categories where applicable
    - Touched up various tool docs
    - Switched default gatkdocs output to html
    - Added parameter in agrregator pom to control output type
    - Set gatkdocs publishing script to output php
    - Deprecated GenotypeAndValidate walker
    - Added back PhoneHome arguments with @Deprecated annotations
 		2016-05-29 16:35:08 -04:00
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src GATKDocs overhaul 2016-05-29 16:35:08 -04:00
pom.xml Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00