Mark DePristo f800f3fb88 Optimized diploid exact AF calculation uses maxACs to stop the calculation by maxAC by allele ... -- Added unit tests to ensure the approximation isn't so far from our reference implementation (DiploidExactAFCalculation)		2012-10-15 07:53:54 -04:00
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bqsr	updating BQSR integration tests	2012-09-19 14:10:34 -04:00
compression/reducereads	Refactored the BaseCounts classes so that they are safer and allow for calculations on the most probable base (which is not necessarily the most common base).	2012-10-04 10:37:11 -04:00
genotyper	Optimized diploid exact AF calculation uses maxACs to stop the calculation by maxAC by allele	2012-10-15 07:53:54 -04:00
haplotypecaller	Turning on allele trimming for the haplotype caller.	2012-10-10 10:47:26 -04:00