gatk-3.8/scala/qscript
kshakir 00b57c751b Added missing ".0".
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5682 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-22 21:50:07 +00:00
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core V2 -- now working -- of a core walker that creates the standard GATK resource bundle 2011-04-20 12:48:47 +00:00
examples When /etc/mailname is unreadable fall back to the hostname. 2011-04-11 20:22:44 +00:00
lib Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires. 2010-12-15 03:33:36 +00:00
oneoffs Queue graph time is currently of O(n^m) where n = num jobs, m = num unique base files. This script therefore was running in order 1200^16, which I don't think would finish before the heat death of the universe. For now, push down the number of files to 1 and gather them outside of Queue, once I've fixed up scatter-gather in core, outputs can be uncommented. 2011-04-21 12:56:25 +00:00
playground Added missing ".0". 2011-04-22 21:50:07 +00:00