rpoplin f2e539c52f As per discussions with Tim we are reverting the previous change regarding PairedReadOrderCovariate. The CycleCovariate now differentiates between first and second of pair by multiplying the cycle by -1. PairedReadOrderCovariate has been removed completely. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2592 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-15 18:18:59 +00:00
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Aligner.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
CreatePackager.xsl	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
FixBAMSortOrder.xml	Adding a package description for making a version of the GATK that only includes the FixBAMSortOrderTag walker.	2009-12-22 00:35:24 +00:00
GATK-Picard.xml	Create package that contains just what Picard needs.	2009-12-21 18:48:27 +00:00
GATKResources.xml	Added b37 reference files and dbsnp 130 rods to resources	2010-01-14 03:28:22 +00:00
GenomeAnalysisTK.xml	As per discussions with Tim we are reverting the previous change regarding PairedReadOrderCovariate. The CycleCovariate now differentiates between first and second of pair by multiplying the cycle by -1. PairedReadOrderCovariate has been removed completely.	2010-01-15 18:18:59 +00:00
PicardPrivate.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00