Khalid Shakir b8b7f28aa9 Revving Picard to pick up new SamFileHeaderMerger. ... Updated ReadFilter abstract class to implement (via UnsupportedOperationException) the new SamRecordFilter.filterOut(). In IndelRealignerIntegrationTest updates for Picard fixes to SAMRecord.getInferredInsertSize() in svn r1115 & r1124. - Ran FixMates to create new input BAM since running IR with variable maxReadsInMemory means all reads weren't realigned leading to different outputs. - Updated md5s to match new expectations after looking at TLEN diff engine output.		2012-05-02 16:47:28 -04:00
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helpTemplates	Build.xml -- contracts not built by default. Slightly simpler CSS for dl.	2011-08-19 15:07:26 -04:00
repository	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
ivysettings.properties	Moved build.xml, ivy.xml and settings to root of Sting repository.	2009-03-18 19:13:19 +00:00
ivysettings.xml	Point ivy to the maven repo instead of the default ibiblio repo. Drastically	2011-08-31 17:27:25 -04:00