gatk3的最后一个经典版本3.8

Khalid Shakir b8b7f28aa9 Revving Picard to pick up new SamFileHeaderMerger. ... Updated ReadFilter abstract class to implement (via UnsupportedOperationException) the new SamRecordFilter.filterOut(). In IndelRealignerIntegrationTest updates for Picard fixes to SAMRecord.getInferredInsertSize() in svn r1115 & r1124. - Ran FixMates to create new input BAM since running IR with variable maxReadsInMemory means all reads weren't realigned leading to different outputs. - Updated md5s to match new expectations after looking at TLEN diff engine output.		2012-05-02 16:47:28 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
public	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
settings	Revving Picard to pick up new SamFileHeaderMerger.	2012-05-02 16:47:28 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Added function to get bases from the current base forward in the window in ReferenceContext	2012-04-06 16:07:46 -04:00
ivy.xml	Minor cleanup before push	2012-05-01 14:16:44 -04:00