gatk-3.8/public/scala/src/org/broadinstitute/sting/queue
Mark DePristo f77d2e6965 Renamed NO_HEADER to the more accurate no_cmdline_in_header
-- Also no_cmdline_in_header permits us to write contigs into the header, so that the shadow BCF system can work as well
2012-05-24 10:57:08 -04:00
..
engine Merged bug fix from Stable into Unstable 2012-01-10 16:16:10 -05:00
extensions Renamed NO_HEADER to the more accurate no_cmdline_in_header 2012-05-24 10:57:08 -04:00
function Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc. 2012-01-23 16:17:04 -05:00
library Fix edge case for very small VCFs 2012-01-19 00:51:28 -05:00
util Removed old GATKReport code and moved the new stuff in its place. 2012-05-18 01:44:31 -04:00
QCommandLine.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00
QException.scala Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
QScript.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00
QScriptManager.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00
QSettings.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00