Mark DePristo 0a3172a9f1 Fix for ref 0 bases for Chris ... -- Disturbingly, fixing this bug doesn't actually cause an test failures. -- Wrote a new QCRefWalker to actually check in detail that the reference bases coming into the RefWalker are all correct when comparing against a clean uncached load of the contig bases directly. -- However, I cannot run this tool due to some kind of weird BAM error -- sending this on to Matt		2012-01-24 10:55:09 -05:00
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ArtificialFastaUtils.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
CachingIndexedFastaSequenceFile.java	Fix for ref 0 bases for Chris	2012-01-24 10:55:09 -05:00
package-info.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00