gatk-3.8/java/src/org/broadinstitute/sting/playground/fourbasecaller
kiran 7d889c0661 Refactored into oblivon.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@276 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-02 22:12:15 +00:00
..
BasecallingBaseModel.java A class that represents the model parameters for all of the Gaussian models at a given cycle. Handles the accumulation of parameter initialization data and provides for efficient computation of base probability distribution. 2009-04-02 22:07:47 +00:00
BasecallingReadModel.java A class that represents the model parameters for all of the Gaussian models for all cycles. 2009-04-02 22:08:10 +00:00
FourBaseRecaller.java Should now be appropriately using Bustard data to call bases (there are some mathematical subtleties that arise when no longer using ICs as initialization data. Also writes some more relevant fields in the SAM records. WAAAAAY simpler than old version. Like, super way. 2009-04-02 22:10:13 +00:00
FourProb.java A convenience class for manipulation base probability distributions. 2009-04-02 22:08:31 +00:00