46 lines
2.6 KiB
XML
46 lines
2.6 KiB
XML
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<ivy-module version="1.0">
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<info organisation="org.broadinstitute" module="Sting"/>
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<configurations>
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<conf name="default" description="the core dependencies for the GATK"/>
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<conf name="scala" extends="default" description="the dependencies for scala"/>
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</configurations>
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<dependencies defaultconf="default">
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<dependency org="net.sf" name="sam" rev="latest.integration" conf="default"/>
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<dependency org="net.sf" name="picard" rev="latest.integration" conf="default"/>
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<dependency org="edu.mit.broad" name="picard-private-parts" rev="latest.integration" conf="default"/>
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<dependency org="junit" name="junit" rev="4.4" conf="default"/>
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<dependency org="log4j" name="log4j" rev="1.2.15" conf="default"/>
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<dependency org="colt" name="colt" rev="1.2.0" conf="default"/>
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<dependency org="jboss" name="javassist" rev="3.7.ga" conf="default"/>
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<dependency org="org.simpleframework" name="simple-xml" rev="2.0.4" conf="default"/>
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<dependency org="org.apache.bcel" name="bcel" rev="5.2" conf="default"/>
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<dependency org="org.broad" name="tribble" rev="latest.integration" conf="default"/>
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<!-- Dependencies for reflections mvn repository -->
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<dependency org="org.reflections" name="reflections" rev="0.9.5-svnversion79M_mod2" conf="default"/>
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<dependency org="com.google.collections" name="google-collections" rev="0.9" conf="default"/>
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<dependency org="javassist" name="javassist" rev="3.8.0.GA"/>
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<dependency org="ch.qos.logback" name="logback-core" rev="0.9.9"/>
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<dependency org="ch.qos.logback" name="logback-classic" rev="0.9.9"/>
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<dependency org="org.slf4j" name="slf4j-api" rev="1.5.6"/>
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<dependency org="xml-apis" name="xml-apis" rev="1.0.b2"/>
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<dependency org="com.google.collections" name="google-collections" rev="1.0"/>
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<dependency org="dom4j" name="dom4j" rev="1.6"/>
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<!-- Matrix package from math.nist.gov -->
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<dependency org="gov.nist" name="Jama" rev="1.0.2" conf="default"/>
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<!-- Dependencies for the graph aligner -->
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<dependency org="org.jgrapht" name="jgrapht-jdk1.5" rev="0.7.3" conf="default"/>
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<!-- Dependencies for VariantFiltration -->
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<dependency org="commons-jexl" name="commons-jexl" rev="1.1" conf="default"/>
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<dependency org="commons-logging" name="commons-logging" rev="1.1.1" conf="default"/>
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<!-- Scala dependancies -->
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<dependency org="org.scala-lang" name="scala-compiler" rev="2.7.7" conf="scala->default"/>
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<dependency org="org.scala-lang" name="scala-library" rev="2.7.7" conf="scala->default"/>
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</dependencies>
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</ivy-module>
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