kcibul b820130dce * added ability to load multiple BAM files from command line ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@489 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-22 00:28:08 +00:00
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dataSources	Temporary workaround for samtools index bug: there seems to be an off-by-one error. Will file bug report.	2009-04-17 23:14:41 +00:00
executive	* added ability to load multiple BAM files from command line	2009-04-22 00:28:08 +00:00
iterators	fixed the case when you're not seeking, it didn't initalize	2009-04-16 22:16:03 +00:00
refdata	updated interface	2009-04-21 21:07:20 +00:00
traversals	Remove some copied code to make sure the traversal engine stays in sync with the locus context provider.	2009-04-17 16:41:56 +00:00
walkers	Added an argument ('extended' or 'ext') that outputs the four-base probs in a long format.	2009-04-21 22:27:26 +00:00
GenomeAnalysisTK.java	trivial checking / flagging issues to enable testing of merging iterator performance	2009-04-17 03:11:59 +00:00
LocusContext.java	Added lots of assertions to check for problems.	2009-04-14 00:55:19 +00:00
WalkerManager.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00